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ERX5306443: Illumina HiSeq 2500 paired end sequencing
1 ILLUMINA (Illumina HiSeq 2500) run: 1.2M spots, 173.4M bases, 111.2Mb downloads

Design: N/A
Submitted by: UNIVERSITY OF MANCHESTER, UK
Study: The evolutionary relationship between bere barley and other types of cultivated barley
show Abstracthide Abstract
We used genotyping-by-sequencing to investigate the evolutionary history of bere, the oldest barley variety still cultivated in Britain and possibly in all of Europe. With a panel of 203 wild and 401 cultivated barley accessions, including 35 samples identified as bere, we identified 9719 single nucleotide polymorphisms (SNPs) with an average read depth of 3.8×. The beres formed two genetically-distinct groups, the largest of which included beres from Orkney and the Scottish Western Isles, as well as varieties not identified as bere from the Faroe Islands. This group of beres was distinct from other British barleys, but had a close genetic affiliation with Scandinavian accessions. Although the data were partly compatible with the traditional view that bere was introduced to Scotland by the Vikings during the 8th century AD, the evidence as whole suggested that the bere and Scandinavian barleys are sister groups descended from a more distant common progenitor, possibly dating to the Bronze Age when hulled barleys first become common in northern Europe. A second, smaller group of beres, which included a traditional Welsh variety, was genetically distinct from the main group and probably represents a more recent introduction of barley from central Europe. Our results emphasize the uniqueness of bere barley and its importance both as a heritage crop and a potential source of germplasm for breeding programmes.
Sample: Accession
SAMEA8236345 • ERS5922619 • All experiments • All runs
Library:
Name: N/A
Instrument: Illumina HiSeq 2500
Strategy: GBS
Source: GENOMIC
Selection: Reduced Representation
Layout: PAIRED
Runs: 1 run, 1.2M spots, 173.4M bases, 111.2Mb
Run# of Spots# of BasesSizePublished
ERR55259731,204,203173.4M111.2Mb2022-04-02

ID:
21017261

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